Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CESC rs11582185 chr1:59084143 C/G 2.0E-5 295 21.2 24.6 15.62 KM Plot
CESC rs11590060 chr1:59090388 G/A 5.47E-5 296 21.23 24.9 13.8 KM Plot
CESC rs11603638 chr11:2990526 G/A 2.03E-5 294 21.23 21.2 23.32 KM Plot
CESC rs11628906 chr14:90738002 C/T 2.28E-5 298 20.63 22.12 24.33 KM Plot
CESC rs116360011 chr5:96117797 T/C 8.15E-7 296 21.57 24.17 6.73 KM Plot
CESC rs116456188 chr1:59090073 C/G 3.59E-5 295 21.23 24.6 13.8 KM Plot
CESC rs116549373 chr5:126120870 G/A 0 294 21.23 20.77 1.73 KM Plot
CESC rs116857022 chr8:144405321 C/T 4.19E-5 289 27.2 20.93 18 KM Plot
CESC rs116994688 chr10:81738137 G/C 3.45E-9 297 25.17 16.42 2.62 KM Plot
CESC rs117139504 chr10:81734207 C/A 4.15E-9 298 25.17 16.47 2.62 KM Plot
CESC rs11715591 chr3:161043137 C/T 5.94E-6 298 25.37 19.68 19.4 KM Plot
CESC rs11718905 chr3:161051793 G/A 8.09E-6 291 26.38 20.63 19.05 KM Plot
CESC rs11738810 chr5:96119055 T/C 1.23E-6 297 21.4 24.17 6.73 KM Plot
CESC rs11739020 chr5:96113838 C/T 1.36E-5 299 5.1 24 21.33 KM Plot
CESC rs11741100 chr5:96113245 G/A 2.79E-7 299 21.33 22.6 3.47 KM Plot